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Faculty of Mathematics

 

Dr Nicola De Maio

Publications

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples.
HS Gweon, LP Shaw, J Swann, N De Maio, M AbuOun, R Niehus, ATM Hubbard, MJ Bowes, MJ Bailey, TEA Peto, SJ Hoosdally, AS Walker, RP Sebra, DW Crook, MF Anjum, DS Read, N Stoesser, REHAB consortium
– Environ Microbiome
(2019)
14,
7
(doi: 10.1186/s40793-019-0347-1)
Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.
N De Maio, LP Shaw, A Hubbard, S George, ND Sanderson, J Swann, R Wick, M AbuOun, E Stubberfield, SJ Hoosdally, DW Crook, TEA Peto, AE Sheppard, MJ Bailey, DS Read, MF Anjum, AS Walker, N Stoesser, On Behalf Of The Rehab Consortium
– Microb Genom
(2019)
5,
e000294
(doi: 10.1099/mgen.0.000294)
BEAST 2.5: An advanced software platform for Bayesian evolutionary analysis
R Bouckaert, TG Vaughan, J Barido-Sottani, S Duchêne, M Fourment, A Gavryushkina, J Heled, G Jones, D Kühnert, N De Maio, M Matschiner, FK Mendes, NF Müller, HA Ogilvie, L du Plessis, A Popinga, A Rambaut, D Rasmussen, I Siveroni, MA Suchard, C-H Wu, D Xie, C Zhang, T Stadler, AJ Drummond
– PLoS Comput Biol
(2019)
15,
e1006650
(doi: 10.1371/journal.pcbi.1006650)
Bayesian reconstruction of transmission within outbreaks using genomic variants
N De Maio, CJ Worby, DJ Wilson, N Stoesser
– Plos Computational Biology
(2018)
14,
e1006117
(doi: 10.1371/journal.pcbi.1006117)
Two Distinct Patterns of Clostridium difficile Diversity Across Europe Indicating Contrasting Routes of Spread
DW Eyre, KA Davies, G Davis, WN Fawley, KE Dingle, N De Maio, A Karas, DW Crook, TEA Peto, AS Walker, MH Wilcox, EUCLID Study Group
– Clinical Infectious Diseases
(2018)
67,
1035
(doi: 10.1093/cid/ciy252)
Pneumococcal Capsule Synthesis Locus cps as Evolutionary Hotspot with Potential to Generate Novel Serotypes by Recombination.
RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, P Turner, DM Aanensen, SD Bentley, X Didelot, C Fraser
– Molecular biology and evolution
(2017)
34,
2537
(doi: 10.1093/molbev/msx173)
Community-like genome in single cells of the sulfur bacterium Achromatium oxaliferum
D Ionescu, M Bizic-Ionescu, N De Maio, H Cypionka, H-P Grossart
– Nat Commun
(2017)
8,
455
(doi: 10.1038/s41467-017-00342-9)
Covert dissemination of carbapenemase-producing Klebsiella pneumoniae (KPC) in a successfully controlled outbreak: long- and short-read whole-genome sequencing demonstrate multiple genetic modes of transmission
J Martin, HTT Phan, J Findlay, N Stoesser, L Pankhurst, I Navickaite, N De Maio, DW Eyre, G Toogood, NM Orsi, A Kirby, N Young, JF Turton, RLR Hill, KL Hopkins, N Woodford, TEA Peto, AS Walker, DW Crook, MH Wilcox
– Journal of Antimicrobial Chemotherapy
(2017)
72,
3025
(doi: 10.1093/jac/dkx264)
The Bacterial Sequential Markov Coalescent
N De Maio, DJ Wilson
– Genetics
(2017)
206,
333
(doi: 10.1534/genetics.116.198796)
Frequent recombination of pneumococcal capsule highlights future risks of emergence of novel serotypes
RJ Mostowy, NJ Croucher, N De Maio, C Chewapreecha, SJ Salter, P Turner, DM Aanensen, SD Bentley, X Didelot, C Fraser
(2017)
098335
(doi: 10.1101/098335)
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Email

nd597@cam.ac.uk

Room

G1.17

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