
Publications
SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent.
– PLOS Computational Biology
(2016)
12,
e1005130
(doi: 10.1371/journal.pcbi.1005130)
Reversible polymorphism-aware phylogenetic models and their application to tree inference.
– J Theor Biol
(2016)
407,
362
(doi: 10.1016/j.jtbi.2016.07.042)
Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131
– mBio
(2016)
7,
10.1128/mbio.02162
(doi: 10.1128/mBio.02162-15)
SimBac: simulation of whole bacterial genomes with homologous recombination
– Microbial Genomics
(2016)
2,
10.1099/mgen.0.000044
(doi: 10.1099/mgen.0.000044)
New Routes to Phylogeography: A Bayesian Structured Coalescent Approximation.
– PLoS Genet
(2015)
11,
e1005421
(doi: 10.1371/journal.pgen.1005421)
PoMo: An Allele Frequency-Based Approach for Species Tree Estimation.
– Syst Biol
(2015)
64,
1018
(doi: 10.1093/sysbio/syv048)
VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER
– Evolution
(2013)
67,
3573
(doi: 10.1111/evo.12221)
Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models
– Molecular Biology and Evolution
(2013)
30,
2249
(doi: 10.1093/molbev/mst131)
Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster under laboratory conditions
– J Evol Biol
(2013)
26,
1508
(doi: 10.1111/jeb.12155)
Estimating Empirical Codon Hidden Markov Models
– Molecular Biology and Evolution
(2012)
30,
725
(doi: 10.1093/molbev/mss266)
- <
- 6 of 7