Publications
Short-range template switching in great ape genomes explored using pair hidden Markov models
– Plos Genetics
(2021)
17,
e1009221
(doi: 10.1371/journal.pgen.1009221)
Want to track pandemic variants faster? Fix the bioinformatics bottleneck.
– Nature
(2021)
591,
30
(doi: 10.1038/d41586-021-00525-x)
Sampling bias and model choice in continuous phylogeography: Getting lost on a random walk.
– PLOS Computational Biology
(2021)
17,
e1008561
(doi: 10.1371/journal.pcbi.1008561)
Stability of SARS-CoV-2 phylogenies.
– PLoS Genet
(2020)
16,
e1009175
(doi: 10.1371/journal.pgen.1009175)
Short-range template switching in great ape genomes explored using a pair hidden Markov model
– PLoS Genetics
(2020)
2020.11.09.374694
(doi: 10.1101/2020.11.09.374694)
A Phylodynamic Workflow to Rapidly Gain Insights into the Dispersal History and Dynamics of SARS-CoV-2 Lineages.
– Molecular Biology and Evolution
(2020)
38,
1608
(doi: 10.1093/molbev/msaa284)
The Cumulative Indel Model: Fast and Accurate Statistical Evolutionary Alignment.
– Systematic Biology
(2020)
70,
236
(doi: 10.1093/sysbio/syaa050)
Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines
– Gigascience
(2020)
9,
giaa007
(doi: 10.1093/gigascience/giaa007)
Combining genomics and epidemiology to analyse bi-directional transmission of Mycobacterium bovis in a multi-host system
– eLife
(2019)
8,
e45833
(doi: 10.7554/eLife.45833)
Large expert-curated database for benchmarking document similarity detection in biomedical literature search
– Database (Oxford)
(2019)
2019,
1
(doi: 10.1093/database/baz085)
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