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Faculty of Mathematics

 

Dr Nicola De Maio

Publications

Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Approaches
B Thornlow, A Kramer, C Ye, N De Maio, J McBroome, AS Hinrichs, R Lanfear, Y Turakhia, R Corbett-Detig
– bioRxiv
(2021)
2021.12.02.471004
(doi: 10.1101/2021.12.02.471004)
Genomic reconstruction of the SARS-CoV-2 epidemic in England.
HS Vöhringer, T Sanderson, M Sinnott, N De Maio, T Nguyen, R Goater, F Schwach, I Harrison, J Hellewell, CV Ariani, S Gonçalves, DK Jackson, I Johnston, AW Jung, C Saint, J Sillitoe, M Suciu, N Goldman, J Panovska-Griffiths, Wellcome Sanger Institute COVID-19 Surveillance Team, COVID-19 Genomics UK (COG-UK) Consortium*, E Birney, E Volz, S Funk, D Kwiatkowski et al.
– Nature
(2021)
600,
506
(doi: 10.1038/s41586-021-04069-y)
A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees.
J McBroome, B Thornlow, AS Hinrichs, A Kramer, N De Maio, N Goldman, D Haussler, R Corbett-Detig, Y Turakhia
– Mol Biol Evol
(2021)
38,
5819
(doi: 10.1093/molbev/msab264)
Using host genetics to infer the global spread and evolutionary history of HCV subtype 3a.
S-K Lin, N De Maio, V Pedergnana, C-H Wu, J Thézé, DJ Wilson, E Barnes, MA Ansari
– Virus Evolution
(2021)
7,
veab065
(doi: 10.1093/ve/veab065)
Genetic Variability of the SARS-CoV‑2 Pocketome
S Yazdani, N De Maio, Y Ding, V Shahani, N Goldman, M Schapira
– Journal of Proteome Research
(2021)
20,
4212
(doi: 10.1021/acs.jproteome.1c00206)
A phylogenetic approach for weighting genetic sequences
N De Maio, AV Alekseyenko, WJ Coleman-Smith, F Pardi, MA Suchard, AU Tamuri, J Truszkowski, N Goldman
– BMC Bioinformatics
(2021)
22,
285
(doi: 10.1186/s12859-021-04183-8)
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic.
Y Turakhia, B Thornlow, AS Hinrichs, N De Maio, L Gozashti, R Lanfear, D Haussler, R Corbett-Detig
– Nature Genetics
(2021)
53,
809
(doi: 10.1038/s41588-021-00862-7)
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2
N De Maio, CR Walker, Y Turakhia, R Lanfear, R Corbett-Detig, N Goldman
– Genome Biol Evol
(2021)
13,
evab087
(doi: 10.1093/gbe/evab087)
A daily-updated database and tools for comprehensive SARS-CoV-2 mutation-annotated trees.
J McBroome, B Thornlow, AS Hinrichs, N De Maio, N Goldman, D Haussler, R Corbett-Detig, Y Turakhia
– bioRxiv
(2021)
2021.04.03.438321
(doi: 10.1101/2021.04.03.438321)
phastSim: efficient simulation of sequence evolution for pandemic-scale datasets
N De Maio, W Boulton, L Weilguny, CR Walker, Y Turakhia, R Corbett-Detig, N Goldman
– bioRxiv
(2021)
2021.03.15.435416
(doi: 10.1101/2021.03.15.435416)
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Email

nd597@cam.ac.uk

Room

G1.17

Study at Cambridge

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Research at Cambridge